Species in Phytozome v9.1

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Welcome to Phytozome!

Phytozome is a joint project of the Department of Energy's Joint Genome Institute and the Center for Integrative Genomics to facilitate comparative genomic studies amongst green plants. Famlies of orthologous and paralogous genes that represent the modern descendents of ancestral gene sets are constructed at key phylogenetic nodes. These families allow easy access to clade specific orthology/paralogy relationships as well as clade specific genes and gene expansions. As of release v9.1, Phytozome provides access to forty-one sequenced and annotated green plant genomes which have been clustered into gene families at 20 evolutionarily significant nodes. Where possible, each gene has been annotated with PFAM, KOG, KEGG, and PANTHER assignments, and publicly available annotations from RefSeq, UniProt, TAIR, JGI are hyper-linked and searchable.

Using Phytozome: video tutorials
  • [17 Mar 2014]  Phytozome v10 is now available here
  • [11 Feb 2014]   COMPLETED: Major NERSC maintenance Tuesday Feb 11th. Limited Phytozome availability 8:00am - 8:00 pm
  • [24 Jan 2014]   Updates and early releases: Soybean, Panicum hallii, Brassica rapa FPsc now available.
  • [24 Jan 2014]  Updates and early releases: Soybean, Panicum hallii, Brassica rapa FPsc now available.
    As users await the full release of v10 of Phytozome, expected in the next few weeks, we have decided to make available 3 updated projects: the re-assembly (a2) and re-annotation (v1) of Glycine max, the v1.3 assembly and annotation of Brassica rapa FPsc, and a preliminary annotation and assembly of Hall's panicgrass, Panicum hallii. Gene pages, genome browsers, and data access via BioMart are available for all 3 genomes.
  • [30 Sep 2013]  Early release of Panicum virgatum v1.1 annotation
    Based on a new v1.0 assembly, the new v1.1 early release annotation of switchgrass (Pancium virgatum) is now available.
  • [26 Jun 2013]  Mimulus guttatus v2.0 early release now includes an updated annotation.
    The M. guttatus v2.0 early release, previously genome assembly only, has been updated on Phytozome to include a revised v2.0 gene annotation.
  • [12 Jun 2013]  Minor G. max and C. reinhardtii corrections have been made
    We have fixed errors in reported CDS exon coordinates for G. max Glyma05g02420.2 and Glyma09g15470.1 gene models and corrected protein names for C. reinhardtii Cre14.g613050.t3.1 and Cre16.g681700.t4.1.
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Early release genomes

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